SISBID: Module 1 Big Data Wrangling in R

Instructors: Andrew Jaffe and Jeff Leek

Teaching assitants: Jeremy Roth and Sean Jewell

Class Schedule:

Ressources:

Getting Started:

Please read this to setup your installation of R, git, and install required R packages https://github.com/SISBID/Module1/blob/gh-pages/getting_started.md

Schedule

Day Date Session Resources Description
0 2017-07-10 Background Try R Really simple intro to R online
0 2017-07-10 Background swirl More tutorials on R, in R
0 2017-07-10 Background Datacamp More tutorials on R, in the browser
1 2017-07-10 8:30AM - 10:00AM Welcome and motivation, PDF Why you’re here
1 2017-07-10 8:30AM - 10:00AM Who assessment How to see who we are
1 2017-07-10 8:30AM - 10:00AM Skills assessment Skills Notebook How to see how good we are
1 2017-07-10 8:30AM - 10:00AM Data brainstorming How to find data
1 10:00AM - 10:30AM Break How to rest
1 2017-07-10 10:30AM - 12:00PM Rep. Research/Version Control How to reproduce analysis
1 12:00PM - 1:30PM Lunch How to eat
1 2017-07-10 1:30PM - 3:00PM Try Git How to try git
1 2017-07-10 1:30PM - 3:00PM Install Git/Github How to install git/github
1 2017-07-10 1:30PM - 3:00PM Github lab How to practice git/github
1 3:00PM - 3:30PM Break How to break
1 2017-07-10 3:30PM - 5:00PM Data I/O and Structure, PDF, Video, Lab, Key, How R sees data
- —-
2 2017-07-11 8:30AM - 10:00AM Subsetting, PDF, Lab How to select data
2 10:00AM - 10:30AM Break
2 2017-07-11 10:30AM - 12:00PM Advanced data IO,Lab Different ways of accessing big data
2 12:00PM - 1:30PM Lunch
2 2017-07-11 1:30PM-3:00PM Manipulation/Summarization, Reshaping
2 3:00PM - 3:30PM Break Break
2 2017-07-11 3:30PM - 5:00PM Cleaning data, Lab, Key, Video, PDF Cleaning Data
3 2017-07-12 8:30AM-10:00AM Merging + Databases
3 2017-07-12 8:30AM-10:00AM Big Data “Tricks”, PDF, Video
3 10:00AM - 10:30AM Break
3 2017-07-12 10:30AM-12:00PM Bioconductor/Genomics

Miscellaneous

Feel free to submit typos/errors/etc via the github repository associated with the class: https://github.com/SISBID/Module1

This web-page is modified from Andrew Jaffe’s Summer 2016 R course, which also has great material (some overlapping with ours).

This page was last updated on 2017-07-13 00:20:01 Eastern Time.